Dear all,
I have to model a chimeric protein of two known sequnces. I have gone
through the previous archives and have come across the emails of people who
have done it.
however, I am confused with how to start the first alignment to get the
following alignment file
>P1;proteinA
structureX:proteinA
aaaaaaaaaaaaaaaaaaaaaaaaaaaa----------------------------------*
>P1;proteinB
structureX:proteinB
----------------------------bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb*
>P1;chimera
sequence:chimera
aaaaaaaaaaaaaaaaaaaaaaaaaaaabbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb*
is this the .ali file to give for alignment. Which script should I use.
Kindly help with which is the correct script to use.
Thank you
Regards
Ayesha Fatima
QIUP, Ipoh, Perak
