Hello,
I just downloaded version 9.24 of Modeller onto by macOS version 10.14.1
using Homebrew, but when I try to run the first few lines of the basic
tutorial, I get a lot of "command not found":
Luos-Air:~ luoxiaoran$ >P1;TvLDH
-bash: TvLDH: command not found
Luos-Air:~ luoxiaoran$ sequence:TvLDH:::::::0.00: 0.00
-bash: sequence:TvLDH:::::::0.00:: command not found
Luos-Air:~ luoxiaoran$
MSEAAHVLITGAAGQIGYILSHWIASGELYGDRQVYLHLLDIPPAMNRLTALTMELEDCAFPHLAGFVATTDPKA
-bash:
MSEAAHVLITGAAGQIGYILSHWIASGELYGDRQVYLHLLDIPPAMNRLTALTMELEDCAFPHLAGFVATTDPKA:
command not found
Luos-Air:~ luoxiaoran$
AFKDIDCAFLVASMPLKPGQVRADLISSNSVIFKNTGEYLSKWAKPSVKVLVIGNPDNTNCEIAMLHAKNLKPEN
-bash:
AFKDIDCAFLVASMPLKPGQVRADLISSNSVIFKNTGEYLSKWAKPSVKVLVIGNPDNTNCEIAMLHAKNLKPEN:
command not found
Luos-Air:~ luoxiaoran$
FSSLSMLDQNRAYYEVASKLGVDVKDVHDIIVWGNHGESMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFKKI
-bash:
FSSLSMLDQNRAYYEVASKLGVDVKDVHDIIVWGNHGESMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFKKI:
command not found
Luos-Air:~ luoxiaoran$
GHRAWDILEHRGFTSAASPTKAAIQHMKAWLFGTAPGEVLSMGIPVPEGNPYGIKPGVVFSFPCNVDKEGKIHVV
-bash:
GHRAWDILEHRGFTSAASPTKAAIQHMKAWLFGTAPGEVLSMGIPVPEGNPYGIKPGVVFSFPCNVDKEGKIHVV:
command not found
Luos-Air:~ luoxiaoran$ EGFKVNDWLREKLDFTEKDLFHEKEIALNHLAQGG*
-bash: EGFKVNDWLREKLDFTEKDLFHEKEIALNHLAQGG*: command not found
Luos-Air:~ luoxiaoran$
Then when I try to do this (I am not sure what it is supposed to do, but
have been guaranteed that it works) I get:
Luos-Air:~ luoxiaoran$ cd /users/luoxiaoran/Documents/modAb101
Luos-Air:modAb101 luoxiaoran$ python3 modelAb101.py
Traceback (most recent call last):
File "modelAb101.py", line 2, in <module>
from modeller import * # Load standard Modeller classes
ModuleNotFoundError: No module named 'modeller'
Luos-Air:modAb101 luoxiaoran$
I have tried troubleshooting it by downloading it via the Mac Installer
instead, but that just seemed to interfere with everything so I uninstalled
both versions of Modeller using brew uninstall modeller and sudo rm -rf
/Library/modeller-9.24/ /usr/local/bin/mod9.24
/Library/Python/2.?/site-packages/modeller.pth
/var/db/receipts/org.salilab.modeller.*, and reinstalled it using only brew
install modeller. During uninstalling, I also uninstalled and reinstalled
Homebrew, and manually deleted all the folders that Terminal informed me
could not be deleted automatically (including the Python framework, which I
later found out should never be deleted, so I reinstalled python and
python(a)3.8 using both Homebrew and the official Python website's Mac
Installer for Python 3.8.3) before the reinstallation of Homebrew and
modeller. I also entered the modeller license key by modifying the
config.py document, just as the program told me to.
Do you know what's wrong, how to find out what's wrong, and/or how to solve
it? Thank you so much!
Best,
Luna