Hello,
I am trying to use the following script to fill small regions of a pdf:
from modeller import *
from modeller.scripts import complete_pdb
log.verbose()
env = Environ()
env.libs.topology.read(file='$(LIB)/top_heav.lib') # read topology
env.libs.parameters.read(file='$(LIB)/par.lib') # read parameters
env.io.atom_files_directory =['.']
m=complete_pdb(env, ‘innput.pdb')
m.write(file="output.pdb")
My problem is that at the end, the input and output are the same. I missed a step? Would …
[View More]you have any advice to solve my problem?
Thanks in advance,
Hocine El Khaoudi Enyoury
[View Less]
Hello,
Im trying to refine some loops of my structure. I was wondering if it was possible, with modeller, to force the loop to adapt an alpha helix or beta stand motif while refining.
Thanks in advance,
Hocine El Khaoudi Enyoury
