Dear Modeller users For my research the parameter which i should consider for the best model is from the evaluated program such as PROSA PROCHECK or Verify3D. For Procheck , i use the model which give a quaility of model within >80% core regions. That i used in my project so if any recomments for my research please contact me.
Thank Mr. JItrayut Jitonnom CSML Chiang Mai University Thailand
-----Original Message----- From: carromeu@usp.br Sent: Fri, 02 Dec 2005 21:41:42 -0200 To: modeller_usage@salilab.org Subject: [modeller_usage] How to choose the best model?
> Dear Modeller users, > > I'm generating diverses models to my protein (400 - is this to great?). >However I don't know how is the best parameter to look when choosing the best >model. Objective function from Modeller, ProCheck parameters, Energy >parameters... What parameters you use and why? If using Ramachandran plot as a >discriminative parameter, how great must be the parameters calculated (for >example: >90% in favored regions,
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