Thanks for the suggestion!
I've forced with small problem during installation of the ModPipe: while running setup file it ask me
You need to have a copy of MODELLER in the ext/mod/ directory. Please install it (see the documentation) then rerun this script.
(here my modeller have been installed in the default dirs using sudo env KEY_MODELLER=***** dpkg -i modeller_9.13-1_amd64.deb
how I could provide correct install path to dpkg?
2) Are there any usefull tutotials for the ModPipe besides presented in readme ?
2014-04-15 0:32 GMT+04:00 Modeller Caretaker modeller-care@salilab.org:
> On 4/14/14, 4:43 AM, James Starlight wrote: > >> I'm looking for the posible modeling script which could do: >> >> i - multiple sequence alignment of several sequences agains target >> sequence (for which experimental structure is exist) to detect common >> functional-relevant motifs in each sequence of ensemble >> >> ii- select the aligned sequence from the ensemble >> >> iii- make a homology model for this structure based on the provided >> experimental (reference) structure including S-S bridges and ligand's >> coppied from the reference. >> >> Please provide me with simolple python example of such fussion of >> sequence analysis and homology modeling, >> > > What you're describing isn't particularly simple, so I doubt a "simple > python example" will be forthcoming. ;) One solution would be to use > ModPipe (http://salilab.org/modpipe/). > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage >