[modeller_usage] Re: modeller running-help

Elavazhagan wrote: > My alignment file has the header as > >>P1;1JLN > > structureX:1JLN: 252 :A: 548 :A:undefined:undefined:-1.00:-1.00 > > What do the last four sections (undefined:undefined:-1.00:-1.00) indicate?

See http://salilab.org/modeller/manual/node64.html

> I have found the error in log file as > > check_a_337E> Structure not read in: 1 > recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1

It usually means that your alignment does not match the PDB file. See http://salilab.org/modeller/FAQ.html#27

Ben Webb, Modeller Caretaker