This new scoring sounds very interesting, could anyone point me to any study/paper/test set where this method has demonstrated improvement over the original loopmodel routine (i.e. w/o GB/SA scoring?)

Hugo

David Hall wrote: > http://www.salilab.org/modeller/manual/node90.html ? > > -David > > On Jul 4, 2010, at 10:25 AM, albert leuven@yeah.net wrote: > > Hello > I have see the ppt in Modeller website and it is said that in Modeller9V8 has a new method for loop building and refinement, i.e: Newer DOPE + GB/SA protocol("dope_loopmodel"). However, in the lastest Modeller manual I don't find such kind of function. I would be very appreciated if someone could tell me how to use this new function or where I can find a scrips of Modeller. > > Thank you > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > https://salilab.org/mailman/listinfo/modeller_usage > > > > > _______________________________________________ > modeller_usage mailing list > modeller_usage@salilab.org > https://salilab.org/mailman/listinfo/modeller_usage >