Shiyong,

After modeler exits, you should cat the MODEL and MODEL2 files together. MODELLER does not write both the models in the same file.

Eswar.

--- Eswar Narayanan, Ph.D Mission Bay Genentech Hall 600 16th Street, Suite N474Q University of California, San Francisco San Francisco, CA 94143-2240 (CA 94107 for courier) Tel +1 (415) 514-4233; Fax +1 (415) 514-4231

-----Original Message----- From: owner-modeller_usage@salilab.org [mailto:owner-modeller_usage@salilab.org] On Behalf Of Shiyong Liu Sent: Wednesday, April 23, 2003 1:41 AM To: modeller_usage@salilab.org Subject: Superposer two protein structure

Dear all,

When I do superpose two proteins , I don't know how to output the structures of the two proteins totally. In the default superpose.top script, the output command is WRITE_MODEL2 FILE = '2ctx.fit' . I want to output two structures in one file at the same time so that I can display them easily in one windows.

Best regards,

Shiyong

Peking University