Hi,
I have just installed Modeller exactly the way as given in the User's Manual on an SGI Fuel. However, when I try running the command "mod model-default" which is a script file available with modeller, the error message I get is " 'mod' command not found".
I am sure there's something silly that I am missing, but can't figure out. Is there any stack requirement for running MODELLER on SGI FUEl? Can anyone help me start using MODELLER ?
- Urmi Doshi
Thank you all. I tried mod and mod6v2 , but doesn't run. I get this message everytime I start the UNIX shell limit stacksize unlimited : can't remove limit which is set in .cshrc. Is this the reason why modeller does not seem to work? -Urmi ----- Original Message ----- From: "Peter C. Lai" sirmoo@cowbert.2y.net To: "Luis Rosales" ludwig@biomedicas.unam.mx Cc: "Bozidar Yerkovich" bozidar@salilab.org; "Urmi Doshi" urdoshi@wam.umd.edu; modeller_usage@salilab.org Sent: Tuesday, March 04, 2003 7:51 PM Subject: Re: New to Modeller !!
> I am using a default installation on my SGI Octane. > 'mod6v2' is the shell script in $MODINSTALL6v2/bin, > which calls mod6v2_iris4d (since iris4d is what $EXECUTABLE_TYPE6v2 is set to) > LIBS_LIB6v2 is set to $MODINSTALL6v2/modlib/libs.lib. > > hope that helps in terms of configuration. > > On Tue, Mar 04, 2003 at 04:53:01PM -0600, Luis Rosales wrote: > > Hi: > > > > Maybe your command for modeller is not "mod", mine is mod6v2 and is the > > default I got from the installation script... > > > > Hope this helps, > > > > Luis > > > > > > ----- Original Message ----- > > From: "Bozidar Yerkovich" bozidar@salilab.org > > To: "Urmi Doshi" urdoshi@wam.umd.edu > > Cc: modeller_usage@salilab.org > > Sent: Tuesday, March 04, 2003 3:36 PM > > Subject: Re: New to Modeller !! > > > > > > > > > > Urmi, > > > Did you source your .cshrc file? > > > Bozidar > > > > > > On Tue, 1 Oct 2002, Urmi Doshi wrote: > > > > > > > Hi, > > > > > > > > I have just installed Modeller exactly the way as given in the User's > > Manual on an SGI Fuel. However, when I try running the command "mod > > model-default" which is a script file available with modeller, the error > > message I get is " 'mod' command not found". > > > > > > > > I am sure there's something silly that I am missing, but can't figure > > out. Is there any stack requirement for running MODELLER on SGI FUEl? > > > > Can anyone help me start using MODELLER ? > > > > > > > > - Urmi Doshi > > > > > > > > > > -- > Peter C. Lai > University of Connecticut > Dept. of Molecular and Cell Biology > Yale University School of Medicine > SenseLab | Research Assistant > http://cowbert.2y.net/ > >
Urmi, Did you source your .cshrc file? Bozidar
On Tue, 1 Oct 2002, Urmi Doshi wrote:
> Hi, > > I have just installed Modeller exactly the way as given in the User's Manual on an SGI Fuel. However, when I try running the command "mod model-default" which is a script file available with modeller, the error message I get is " 'mod' command not found". > > I am sure there's something silly that I am missing, but can't figure out. Is there any stack requirement for running MODELLER on SGI FUEl? > Can anyone help me start using MODELLER ? > > - Urmi Doshi >
Hi:
Maybe your command for modeller is not "mod", mine is mod6v2 and is the default I got from the installation script...
Hope this helps,
Luis
----- Original Message ----- From: "Bozidar Yerkovich" bozidar@salilab.org To: "Urmi Doshi" urdoshi@wam.umd.edu Cc: modeller_usage@salilab.org Sent: Tuesday, March 04, 2003 3:36 PM Subject: Re: New to Modeller !!
> > Urmi, > Did you source your .cshrc file? > Bozidar > > On Tue, 1 Oct 2002, Urmi Doshi wrote: > > > Hi, > > > > I have just installed Modeller exactly the way as given in the User's Manual on an SGI Fuel. However, when I try running the command "mod model-default" which is a script file available with modeller, the error message I get is " 'mod' command not found". > > > > I am sure there's something silly that I am missing, but can't figure out. Is there any stack requirement for running MODELLER on SGI FUEl? > > Can anyone help me start using MODELLER ? > > > > - Urmi Doshi > >
I am using a default installation on my SGI Octane. 'mod6v2' is the shell script in $MODINSTALL6v2/bin, which calls mod6v2_iris4d (since iris4d is what $EXECUTABLE_TYPE6v2 is set to) LIBS_LIB6v2 is set to $MODINSTALL6v2/modlib/libs.lib.
hope that helps in terms of configuration.
On Tue, Mar 04, 2003 at 04:53:01PM -0600, Luis Rosales wrote: > Hi: > > Maybe your command for modeller is not "mod", mine is mod6v2 and is the > default I got from the installation script... > > Hope this helps, > > Luis > > > ----- Original Message ----- > From: "Bozidar Yerkovich" bozidar@salilab.org > To: "Urmi Doshi" urdoshi@wam.umd.edu > Cc: modeller_usage@salilab.org > Sent: Tuesday, March 04, 2003 3:36 PM > Subject: Re: New to Modeller !! > > > > > > Urmi, > > Did you source your .cshrc file? > > Bozidar > > > > On Tue, 1 Oct 2002, Urmi Doshi wrote: > > > > > Hi, > > > > > > I have just installed Modeller exactly the way as given in the User's > Manual on an SGI Fuel. However, when I try running the command "mod > model-default" which is a script file available with modeller, the error > message I get is " 'mod' command not found". > > > > > > I am sure there's something silly that I am missing, but can't figure > out. Is there any stack requirement for running MODELLER on SGI FUEl? > > > Can anyone help me start using MODELLER ? > > > > > > - Urmi Doshi > > > > >
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Bozidar Yerkovich -
Luis Rosales -
Peter C. Lai -
Urmi Doshi