Hello Benn,
I am a regular user of MODELLER. I was using 6v2 before this but now I switched to 7v7. I got very strange errors, which I never got in 6v2. Could you please explain. I found some similar posts in concern to these, but no solutions.
--------------log file output----------
assgn___547E> Incorrect element type for variable: OUTPUT_CONTROL Element, element type: 3 Command line: SET OUTPUT_CONTROL = 1 1 1 1 1 assgn___525E> Error in TOP variable assignment. assgn___547E> Incorrect element type for variable: LIBRARY_SCHEDULE Element, element type: 3 Command line: SET LIBRARY_SCHEDULE = 1 assgn___525E> Error in TOP variable assignment. assgn___547E> Incorrect element type for variable: DYNAMIC_COULOMB Element, element type: 3 Command line: SET DYNAMIC_COULOMB = ON assgn___525E> Error in TOP variable assignment. assgn___547E> Incorrect element type for variable: HETATM_IO Element, element type: 3 Command line: SET HETATM_IO = 'on' assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: ALNFILE Command line: SET ALNFILE = 'alignment.ali' assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: KNOWNS Command line: SET KNOWNS = 'hrc' assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: STARTING_MODEL Command line: SET STARTING_MODEL = 1 assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: ENDING_MODEL Command line: SET ENDING_MODEL = 5 assgn___525E> Error in TOP variable assignment. assgn___544E> Variable name not recognized: MD_LEVEL Command line: SET MD_LEVEL = 'refine_1' assgn___525E> Error in TOP variable assignment. compile_563E> Please correct the errors reported above and rerun MODELLER. recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 56755 55.425 0.054 Starting time : 2005/03/14 11:07:32.511 Closing time : 2005/03/14 11:07:33.531 Total CPU time [seconds] : 0.99
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While model-default.top in examples runs perfectly alright.
What can be the problem?
Please suggest.
br,
Vivek
vivek sharma wrote: > I am a regular user of MODELLER. I was using 6v2 before this but now I > switched to 7v7. I got very strange errors, which I never got in 6v2. > Could you please explain. I found some similar posts in concern to these, > but no solutions. > > --------------log file output---------- > > assgn___547E> Incorrect element type for variable: OUTPUT_CONTROL > Element, element type: 3 > Command line: SET OUTPUT_CONTROL = 1 1 1 1 1
There is obviously nothing wrong with your Modeller installation, since as you say, model-default.top works OK. There must be something wrong with your input file, but it's difficult to tell what that might be without seeing it.
Ben Webb, Modeller Caretaker
Dear Benn,
Actually, I also didnt understand the problem, I was using perfectly OK input file, I checked it very carefully, but it didnt worked. Well I dont have it any more. But to make it run, I used model-default.top and changed all values in this as I wanted and used it for my own work. It worked without all these strange errors. Although, problem is not solved. I will get back to you if similar problem arises.
Best regards,
Vivek
On Mon, 14 Mar 2005, Modeller Caretaker wrote:
> vivek sharma wrote: > > I am a regular user of MODELLER. I was using 6v2 before this but now I > > switched to 7v7. I got very strange errors, which I never got in 6v2. > > Could you please explain. I found some similar posts in concern to these, > > but no solutions. > > > > --------------log file output---------- > > > > assgn___547E> Incorrect element type for variable: OUTPUT_CONTROL > > Element, element type: 3 > > Command line: SET OUTPUT_CONTROL = 1 1 1 1 1 > > There is obviously nothing wrong with your Modeller installation, since > as you say, model-default.top works OK. There must be something wrong > with your input file, but it's difficult to tell what that might be > without seeing it. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage >
VIVEK SHARMA HBG BI
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Modeller Caretaker -
vivek sharma -
vsharma