Hopefully somebody on modeller_usage@salilab.org will respond. a
-- Andrej Sali, Professor Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and California Institute for Quantitative Biomedical Research Mission Bay Genentech Hall 600 16th Street, Suite N472D University of California, San Francisco San Francisco, CA 94143-2240 (CA 94107 for direct delivery by courier) Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Tel Assistant +1 (415)514-4228; Lab +1 (415) 514-4232, 4233, 4258 Email sali@salilab.org; Web http://salilab.org
> -----Original Message----- > From: hjslfad lhasfh [mailto:pannirselvam_m@yahoo.com] > Sent: Tuesday, June 10, 2003 7:15 AM > To: sali@salilab.org > Subject: problem in installing modeller > > > respected sir/madam, > > while installing the modeller, i > encountered a peculiar problem. The installation of > files was proper, but when i try to run 'mod6v2' > executable file in modeller's bin directory, i am > getting the error message as "command not found". > > so kindly provide me with further > information to install the program > > yours sincerely > > pannir > > __________________________________ > Do you Yahoo!? > Yahoo! Calendar - Free online calendar with sync to > Outlook(TM). http://calendar.yahoo.com >
Hi Pannir,
Which OS are u using? If you are using linux with the default bash then in the lines that MODELLER adds to your login script you have to have
alias mod=mod6v2
instead of the usual line that MODELLER writes (I don't remember what it writes .. something like export mod=mod6v2).
with regards raghu
> Hopefully somebody on modeller_usage@salilab.org will respond. a > > -- > Andrej Sali, Professor > Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and > California Institute for Quantitative Biomedical Research > Mission Bay Genentech Hall > 600 16th Street, Suite N472D > University of California, San Francisco > San Francisco, CA 94143-2240 (CA 94107 for direct delivery by courier) > Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 > Tel Assistant +1 (415)514-4228; Lab +1 (415) 514-4232, 4233, 4258 > Email sali@salilab.org; Web http://salilab.org > > > > -----Original Message----- > > From: hjslfad lhasfh [mailto:pannirselvam_m@yahoo.com] > > Sent: Tuesday, June 10, 2003 7:15 AM > > To: sali@salilab.org > > Subject: problem in installing modeller > > > > > > respected sir/madam, > > > > while installing the modeller, i > > encountered a peculiar problem. The installation of > > files was proper, but when i try to run 'mod6v2' > > executable file in modeller's bin directory, i am > > getting the error message as "command not found". > > > > so kindly provide me with further > > information to install the program > > > > yours sincerely > > > > pannir > > > > __________________________________ > > Do you Yahoo!? > > Yahoo! Calendar - Free online calendar with sync to > > Outlook(TM). http://calendar.yahoo.com > > > > >
Hi,
On 2003-06-11 10:36 you wrote: > Which OS are u using? If you are using linux with the default bash then in > the lines that MODELLER adds to your login script you have to have > > alias mod=mod6v2 > > instead of the usual line that MODELLER writes (I don't remember what it > writes .. something like export mod=mod6v2). > > > > -----Original Message----- > > > From: hjslfad lhasfh [mailto:pannirselvam_m@yahoo.com] > > > Subject: problem in installing modeller > > > > > > while installing the modeller, i > > > encountered a peculiar problem. The installation of > > > files was proper, but when i try to run 'mod6v2' > > > executable file in modeller's bin directory, i am > > > getting the error message as "command not found".
Pannir, are you actually running the mod6v2 script directly? If so, then perhaps the first line of the file is incorrect. It should say "#!/bin/sh", which really ought to be present on every flavour of UNIX/Linux system. If you are not running it directly in the modeller6v2/bin directory, then I'd agree with Raghu, but as well as the alias not being set, it could be that the modeller6v2/bin directory has not been added to your PATH environment variable correctly . This would be the case if you followed the standard installation instructions, but you normally use a shell other than csh or tcsh.
Cheers, Robert
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Andrej Sali -
Raghurama P. Hegde -
Robert Campbell