Dear friends,

The bottom is my ali file.The template has 267 residues in A-chain and 267 residues in B-chain.After 267th residue in the template .atm file two heteroatoms are there.

I want to include that heteroatoms in my target protein(omp).

say that heteroatoms start with 601 and 602 after 267th residue of B-chain how can i include in this line:

>P1;xxx structureX:1dqx: 1 :A: 267 :B: 1 : 267 : 2.10:99.90

So, that it takes that heteroatoms and include that in target protein. If i try to do like this

>P1;xxx structureX:1dqx: 1 :A: 267 :B: 1 : 267 : : 601 : 602 : 2.10:99.90 it says residue index out of bounds.

please suggest me solution for this.

>P1;xxx structureX:xxx: 1 :A: 267 :B: 1 : 267 : 2.10:99.90 MHKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT HVDILTDFSMEGTVKPLKALSAK--YNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADI TNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGEYTKGTVDIAKSDKDF VIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLF AKGRDAKVEGERYRKAG-WEAYLRRCGQQD----/MHKATYKERAATHPSPVAAKLFNIM HEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAK-- YNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKE PRGLLMLAELSCKGSLSTGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPG VGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAG-WEAYLRR CGQQD----/..* >P1;omp MTGFGLRLAEAKARRGPLCLGIDPHPELLRGWDLATTADGLAAFCDICVRAFADFAVVKP QVAFFESYGAAGFAVLERTIAELRAADVLVLADAKRGDIGATMSAYATAWVGDSPLAADA VTASPYLGFGSLRPLLEVAAAHGRGVFVLAATSNPEGAAVQNAAADGRSVAQLVVDQVGA ANEAAGPGPGSIGVVVGATAPQAPDLSAFTGPVLVPGVGVQGGRPEALGGLGGAASSQLL PAVAREVLRAGPGVPELRAAGERMRDAVAYLAAV/MTGFGLRLAEAKARRGPLCLGIDPH PELLRGWDLATTADGLAAFCDICVRAFADFAVVKPQVAFFESYGAAGFAVLERTIAELRA ADVLVLADAKRGDIGATMSAYATAWVGDSPLAADAVTASPYLGFGSLRPLLEVAAAHGRG VFVLAATSNPEGAAVQNAAADGRSVAQLVVDQVGAANEAAGPGPGSIGVVVGATAPQAPD LSAFTGPVLVPGVGVQGGRPEALGGLGGAASSQLLPAVAREVLRAGPGVPELRAAGERMR DAVAYLAAV/..*