Hi,

I just checked and found out that even our in house version of MODELLER, 6v2 (soon to be released though) is still using: # Version: August 13, 1993 # # LIBRARY OF RESIDUE TYPES AND RESIDUE PATCHES # # MODELLER 1.1, Copyright Andrej Sali

Only hope is that someone on the modeller_usage list might have phosphoserine residue.

Good luck, Bozidar

-----Original Message----- From: owner-modeller_usage@salilab.org [mailto:owner-modeller_usage@salilab.org] On Behalf Of Voula Kanelis Sent: Wednesday, April 10, 2002 9:29 AM To: modeller_usage@salilab.org Subject: phospo-serine residues

Hello,

I am currently using Modeller 4 and need a phosphoserine residue. Unfortunately, this residue is not defined in the modlib files and I do not have access to CHARM or QUANTA to be able to create it (a problem to

be fixed shortly - hopefully). Does anyone have such a residue defined and would be willing to share?

Thanks in advance, Voula Kanelis

Hi,

In the light of this discussion I invite all of you to submit their "custom build" residues and I will try to incorporate them either in one of the future editions of MODELLER, or make them available on our web site.

Thanks in advance, Bozidar

-----Original Message----- From: owner-modeller_usage@salilab.org [mailto:owner-modeller_usage@salilab.org] On Behalf Of Andras Fiser Sent: Friday, April 12, 2002 6:14 PM Cc: 'Voula Kanelis'; modeller_usage@salilab.org Subject: Re: phospo-serine residues

It takes some time, but not much to define a new residue type manually. Please follow the steps of FAQ 17 on page 25-26 in the new manual ( the one on our web site).

best wishes,

Andras

Bozidar Jerkovic wrote: > > Hi, > > I just checked and found out that even our in house version of > MODELLER, 6v2 (soon to be released though) is still using: # Version: > August 13, 1993 # > # LIBRARY OF RESIDUE TYPES AND RESIDUE PATCHES > # > # MODELLER 1.1, Copyright Andrej Sali > > Only hope is that someone on the modeller_usage list might have > phosphoserine residue. > > Good luck, > Bozidar > > -----Original Message----- > From: owner-modeller_usage@salilab.org > [mailto:owner-modeller_usage@salilab.org] On Behalf Of > Voula Kanelis > Sent: Wednesday, April 10, 2002 9:29 AM > To: modeller_usage@salilab.org > Subject: phospo-serine residues > > Hello, > > I am currently using Modeller 4 and need a phosphoserine residue. > Unfortunately, this residue is not defined in the modlib files and I > do not have access to CHARM or QUANTA to be able to create it (a > problem to > > be fixed shortly - hopefully). Does anyone have such a residue defined

> and would be willing to share? > > Thanks in advance, > Voula Kanelis > > --