Dear Modeller's users!
I want to model chimeric protein which consist of two fussed proteins ( tail to head fussion C to N termi). It's important that both of that proteins have known spatial structures which could be used as the templates.
In the input I can define merged sequences of my proteins as one entry. Is there any way to use both of the templates to guide such modelling ? In the input option I've found only possibility to use one template. What extra additions should I provide for better modelling of the fussed protein?
Thanks for help
Gleb
On 8/8/12 6:27 AM, James Starlight wrote: > I want to model chimeric protein which consist of two fussed proteins > ( tail to head fussion C to N termi). It's important that both of that > proteins have known spatial structures which could be used as the > templates.
http://salilab.org/modeller/9.10/FAQ.html#1
> Is there any way to use both of the templates to guide such modelling > ? In the input option I've found only possibility to use one template.
'knowns' can be a list of multiple templates. See http://salilab.org/modeller/9.10/manual/node21.html
Ben Webb, Modeller Caretaker
participants (2)
-
James Starlight -
Modeller Caretaker