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Hi, I'd like to build 5 models of my protein with a b-strand in a specific region. After doing the VTFM optimization the b-strand disappears in all the models. How can I do to mantain this b-strand? I'd like to apply a force costant on the C-alpha carbons in that region while refinining the 5 models, the "MAKE_RESTRAINTS RESTRAINT_TYPE = 'STRAND'" command didn't work!! Thanks in advance for your help. Best regards, Paolo Daniele
____________________________________________________________ Nokia 5510 insolito ma geniale. Vai a http://it.promotions.yahoo.com/nokia/ scoprilo e vincilo. Il concorso termina il 16 dicembre 2001.
Paolo,
Well, it should work. How does your top file look like? You need to include it as a special_retsraints subroutine if you use a default top file like FAQ 7 in the manual.
Andras
Paolo Daniele wrote: > > MIME-Version: 1.0 > Content-Type: text/plain; charset=iso-8859-1 > Content-Transfer-Encoding: 8bit > > Hi, > I'd like to build 5 models of my protein > with a b-strand in a specific region. > After doing the VTFM optimization the b-strand > disappears in all the models. > How can I do to mantain this b-strand? > I'd like to apply a force costant on the C-alpha > carbons in that region while refinining the 5 models, > the "MAKE_RESTRAINTS RESTRAINT_TYPE = 'STRAND'" > command didn't work!! > Thanks in advance for your help. > Best regards, > Paolo Daniele > > ____________________________________________________________ > Nokia 5510 insolito ma geniale. > Vai a http://it.promotions.yahoo.com/nokia/ > scoprilo e vincilo. Il concorso termina il 16 dicembre 2001.
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Andras Fiser -
Paolo Daniele