Hi Duccio,

Try to use comment line:

structureX:1AI1sp:@:@:X:X:undefined:undefined:-1.00:-1.00

instead of

structureX:1AI1sp

in your alignment file.

In order to use 'check_alignment' command you should at first read in an alignment as it is shown in an example *top file in the 'check_alignment' chapter of the manual. The routine that you use is for automated modeling.

Andras

Duccio Calamandrei wrote: > > Hi everybody, > > I' m tempting invane to model a sequence with three template structures. > > Unfortunately during a preliminary step using only one template, I get > > the > error message reported within the .log file. what can I do? > > p.s. I enclose .ali .log and .pdb files > > Thank you for your kindness > > Duccio. > > ------------------------------------------------------------------------------- > > Subject: desperation > Date: Thu, 09 Mar 2000 17:28:57 +0100 > From: Duccio Calamandrei tetzuo@neriserv.chim.unisi.it > To: fisera@rockefeller.edu > > Name: 1AI1.pdb > 1AI1.pdb Type: unspecified type (application/octet-stream) > Encoding: base64 > > Name: ret4.log > ret4.log Type: unspecified type (application/octet-stream) > Encoding: base64 > > Name: ret4.top > ret4.top Type: unspecified type (application/octet-stream) > Encoding: base64 > > Name: ret4p.ali > ret4p.ali Type: unspecified type (application/octet-stream) > Encoding: base64