The modeller.scripts module (mod8v2) does not contain the complete_pdb method. """ This reads in a PDB file specified by filename, and fills in any missing atoms using internal coordinates. If you want to read in a PDB file from PDB or generated from an experiment or some other program, you should use this routine in preference to model.read(), which does not handle missing atoms."""
I would like to create restraints: http://salilab.org/modeller/manual/node92.html mdl = complete_pdb(env, pdb_id)
Thanks for your help in advance, Tamas
Tamas Hegedus wrote: > The modeller.scripts module (mod8v2) does not contain the complete_pdb > method.
That's because it was introduced in Modeller 9v1. The manual page you pointed to is for Modeller 9v1. (You can find the Modeller 8v2 manual at http://salilab.org/modeller/8v2/manual/)
Ben Webb, Modeller Caretaker