Thijs,

One way to do this is by including a "/" to indicate a chain break in your target sequence and using two templates to align the different parts of the complex.

Eswar

-----Original Message----- From: owner-modeller_usage@salilab.org [mailto:owner-modeller_usage@salilab.org] On Behalf Of Thijs Beuming Sent: Thursday, July 10, 2003 4:55 PM To: modeller_usage@salilab.org Subject: complex

Dear all,

Can anyone tell me if (and how) it is possible to model a protein complex in Modeller? How do I tell Modeller that the two proteins are not connected?

Thanks,

Thijs Beuming