21 Apr
2004
21 Apr
'04
11:32 a.m.
On Sat, Apr 17, 2004 at 10:13:28AM +0100, IPSITA ACHARYA wrote: > I have been trying to model a molecule but i am getting an error that > "alignment sequence not found in pdb". so please help me in providing > some possible reasons and solution against that.
This usually means that your alignment file specifies 'structure' rather than 'sequence' in field 1 (see http://salilab.org/modeller/manual/node72.html) and Modeller cannot find the corresponding PDB file (formed from the PDB code in field 2 of your alignment) or the sequence in the PDB file does not match what you have in your alignment.
Ben Webb, Modeller Caretaker
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