4 Nov
2005
4 Nov
'05
5:23 a.m.
Hello-
Is there a way to force/encourage Modeller to join domains in a manner with few or no clashes/atom overlaps between domains?
My first test modeling a multiple domain protein, just as in the example from FAQ #1, resulted in a model with many clashes between the CAs and other atoms of the domains.
I realize that Modeller cannot correctly predict domain orientation, but I hope there is a way to strongly discourage inter-domain clashes.
Thanks,
Arlo Randall University of California, Irvine