Running v6.1 on RedHat7.2 on a PIII
Trying to use the following script for template selection:
READ_RESTYP_LIB RESTYP_LIB_FILE = '${MODINSTALL6v1}/modlib/restyp.lib' READ_ALIGNMENT FILE = '${MODINSTALL6v1}/modlib/CHAINS_all.seq',; ALIGN_CODES = '1bmdA' '5mdhA' '7mdhA' 4mdhA MALIGN MALIGN3D COMPARE ID_TABLE DENDROGRAM
but I get the error:
read_al_375E> Unknown residue type,position,sequence: 1 4 recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
I tried adding the first line of the script to force reading of the default residue types (in case that was the problem), but it didn't help.
Any help much appreciated
Mike -----Original Message----- From: Voula Kanelis [mailto:kanelis@sauron.psf.sickkids.on.ca] Sent: 10 April 2002 14:29 To: modeller_usage@salilab.org Subject: phospo-serine residues
Hello,
I am currently using Modeller 4 and need a phosphoserine residue. Unfortunately, this residue is not defined in the modlib files and I do not have access to CHARM or QUANTA to be able to create it (a problem to be fixed shortly - hopefully). Does anyone have such a residue defined and would be willing to share?
Thanks in advance, Voula Kanelis