18 Jan
2005
18 Jan
'05
6:07 a.m.
I want to make homology modelling of TM domains without loops in GPCR. But I get error during calculatioons. What wrong I have done?
Respectively yours, Andrew
I use such alignment:
>P1;1L9H X-ray:1L9H:37 : :307 : :rhodopsin:Bos Taurus: : FSMLAAYMFLLIMLGFPINF/YILLNLAVADLFMVFGGFTTT/NLEGFFATLGGEIALWSLVVL/AIMGVAFTWVMALACAAPPLV/FVIYMFVVHFIIPLIVIFFC/VTRMVIIMVIAFLICWLPYAG/FMTIPAFFAKTSAVYNPVIYI*
>P1;1fdx sequence:fzd1:324 : :623 : :Frizzled:Homo Sapiens: : GIWSVLCCASTLFTVLTYLV/IIFLSGCYTAVAVAYIAGFLL/TILFMMLYFFSMASSIWWVIL/YFHLAAWAVPAIKTITILALG/FVLAPLFVYLFIGTSFLLAGF/IGVFSVLYTVPATIVIACYFY/VFMIKYLMTLIVGITSGFWIW *