Hi,
I've been using modeller 4 for about a year and just recently installed modeller 6. The problem I have is that I get segmentation fault when I try to run one of the example files for instance 'model-fast.top' in the exemples/tutorial-model directory.
I'll get the error when the program writes: "Restraint type to be calculated: distance"
An strace of the program before it crashes look like this:
write(1, "Dynamically allocated memory at "..., 94Dynamically allocated memory at amprmcns [B,kB,MB]: 6625069 6469.794 6.318 ) = 94 write(1, "make_re_417_> Restraint type to "..., 57make_re_417_> Restraint type to be calculated: distance ) = 57 stat64("5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("pdb5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("pdb5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("./5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("./5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("./pdb5fd1", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("./pdb5fd1.Z", 0xbfff4cb8) = -1 ENOENT (No such file or directory) stat64("./5fd1.atm", {st_mode=S_IFREG|0644, st_size=84641, ...}) = 0 brk(0x9571000) = 0x9571000 --- SIGSEGV (Segmentation fault) --- +++ killed by SIGSEGV +++
Any suggestions?
Sincerely Björn
-- Björn Wallner Stockholm Bioinformatics Center PhD Student SCFAB, Stockholm University bjorn@sbc.su.se S-106 91 Stockholm Tel:+46-8-553 785 66 Fax:+46-8-5537 8214 Cell:070-521 56 65