On 12/13/2009 02:33 AM, james09 pruza wrote: > While running the model-single.py, I am getting the following error--- > No atoms were read form the specified input pdb file since the starting > residue no and/ or chain ID in Model_Segment <or the alignment file > header> was not found; requested starting position residue no "0" chain "A"
OK, so in that case your alignment file header must be instructing Modeller to read from residue 0:A. See http://salilab.org/modeller/9v7/manual/node445.html for a description of the format (the example at that URL tells Modeller to read 5fd1 from residue 1:A through 106:A).
> My model file starts with residue no 4.
Sounds like you just need to edit the alignment file header to reflect this.
Ben Webb, Modeller Caretaker