bestkarollo wrote: > 3) Residue position is corect so I think that I have to specify > CHAIN ID and tried it - for example: > >> P1;1I1RB > structureX:1I1RB:'6:B 172:B' : : : : > or > structureX:1I1RB:6 :A:172 :A: : : : > > - it didn't help - so my question is > > A)how looks a correct second line when I have to use chain ID
Try a search for 'chain ID' in the archives; this question has been answered dozens of times. Two useful results of the search are: http://salilab.org/archives/modeller_usage/2005/msg00355.html http://salilab.org/modeller/manual/node176.html
The quotes are unnecessary.
> B)In one of my PDB files I have a chain ID which exists as number - 2 > this same question as above
The chain ID can be a number; you don't have to do anything special.
Ben Webb, Modeller Caretaker