On 05/17/2013 12:42 PM, HERBERT MAX VENTHUR PE¥A wrote: > I submitted to ProCheck to evaluate the > model, my question is: Results indicate a 95% of residues in favoured > regions. That valuew, it is enough to have a suitable model?, Could I > perform a docking with this model then?
You can't tell for sure, since it's very easy to make models where all the residues are in favored regions but that are still terrible models! (For example, a completely extended chain would probably score pretty well with this metric.) We usually recommend using an assessment method designed to test models (as opposed to real crystal structures). If using Modeller, we recommend normalized DOPE: http://salilab.org/modeller/9.11/manual/node198.html
Ben Webb, Modeller Caretaker