This is probably due to a very large dimension of the whole system (relative to the number of atoms). I suggest you email me your input file so I can narrow down the problem.
Best, Andrej
-- Andrej Sali, Professor Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and California Institute for Quantitative Biomedical Research Mission Bay Genentech Hall 600 16th Street, Suite N472D University of California, San Francisco San Francisco, CA 94143-2240 (CA 94107 for direct delivery by courier) Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Tel Assistant +1 (415)514-4228; Lab +1 (415) 514-4232, 4233, 4239 Email sali@salilab.org; Web http://salilab.org
> -----Original Message----- > From: yinja@email.uc.edu [mailto:yinja@email.uc.edu] > Sent: Thursday, February 06, 2003 5:28 PM > To: sali@salilab.org > Subject: too many helices > > > Hi, Dr. Sali, > i am running a modeller job, in which there are 45 segment to > enforced to form helix. the job log file complained as > folllows: > =============================================================== > TOP_________> 173 132 MAKE_RESTRAINTS RESTRAINT_TYPE = 'distance', > ADD_RESTRAIN; > TS = 'ON' > > make_re_417_> Restraint type to be calculated: distance > cnctarea_E> Too many cubes. Increase MAXCUBES. kjidim, > maxcubes: 239250 > 50000 =============================================================== > how do i do to by-pass it? two similar jobs have been done > with few number of helices restraints. thanks. > > > Jian Yin > post-doc > university of cincinnati >