8 Sep
2012
8 Sep
'12
12:51 p.m.
On 9/8/12 9:59 AM, Ashish Runthala wrote: > I have a small query. For a considered well reliable template, is it > possible that i can also use the side chain information exactly the > same way from the template, i.e. MODELLER uses the complete backbone > and side-chain information for the aligned residues from the > considered template, and accordingly the MODELLER then predicts the > left over residues through the earlier considered reliable > scaffolds? Please guide me the same way.
You can simply select only the "left over" residues for refinement: http://salilab.org/modeller/9.11/manual/node23.html
Ben Webb, Modeller Caretaker
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