On Mon, 26 Apr 1999, Holger Kremmin wrote:
> Hi, > I want to model several short peptides with a special conformation. > The templates have the polyproline II conformation, but the model-sequences > are far divergent from the template-sequence. > How can I model peptides (8-18 aa) with a given conformation ? >
Holger,
Could I suggest using CHARMM for this? This type of job is fairly easy using that program. I am not sure if there is an easy way in modeller unless you have a good understanding of the restraint set-up in modeller,
Tony Pemberton
********************************************************************* Mr. A.J.Pemberton Tel: +121-414-3388 c/o Dept. Rheumatology, Fax: +121-414-3982 Medical School, E-mail: A.J.Pemberton@bham.ac.uk The University of Birmingham, Birmingham B15 2TT. U.K. *********************************************************************