Unlike per-5 versions of MODELLER, 6.2 should have very few static memory limitations. If you send me your input files, perhaps I can say more about your problem.
Thanks, Andrej
-- Andrej Sali, Professor Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry, and California Institute for Quantitative Biomedical Research Mission Bay Genentech Hall 600 16th Street, Suite N472D University of California, San Francisco San Francisco, CA 94143-2240 (CA 94107 for direct delivery by courier) Tel +1 (415) 514-4227; Fax +1 (415) 514-4231 Tel Assistant +1 (415)514-4228; Lab +1 (415) 514-4232, 4233, 4239 Email sali@salilab.org; Web http://salilab.org
> -----Original Message----- > From: owner-modeller_usage@salilab.org > [mailto:owner-modeller_usage@salilab.org] On Behalf Of Modeller Care > Sent: Monday, March 03, 2003 10:46 AM > To: modeller_usage@salilab.org > Subject: FW: problem with large system > > > > ------ Forwarded Message > From: cathy cathy@bach.urbb.jussieu.fr > Date: Mon, 03 Mar 2003 18:00:38 +0100 > To: modeller-care@salilab.org > Subject: (no subject) > > Dear Sir, > > I try to use Modeller package (6.2 version) for a large > system ( larger than 500 residues). > > The program fails due to the dimesion. Is there any way to > perform computations for such a large system ? > > Previously, I have noticed that different versions for > modeller exist for large systems. > > Thank you > > C.E > > -- > Pr. Catherine ETCHEBEST,Universite Paris VII, Equipe de > Bioinformatique Moleculaire INSERM E0346,Case Courrier 7113, > 2 Place Jussieu 75251 Paris Cedex 05 > > Tour 53, Couloir 53-54 1er Etage Porte > 13,Tel:01-44-27-77-19,Fax : 01 43 26 38 30 EMail:cathy@urbb.jussieu.fr > > > > > ------ End of Forwarded Message >