Thanks for the help, Got more information, problem was missing * at end of .pri file Doohh! Tim
Andras Fiser wrote:
> Hello > > usually the text after _E> should be informative. > > there is a list of error messages, which might not be much more > helpful, but you can take a look: > > $MODINTALL6v0/modlib/messages.lib > > in your cases the alignment format is incorrect somewhere, alignment > code or sequence is not matching the top file variable or the PDB entry. > > an extended log file can be obtained with > > SET OUTPUT_FORMAT = 1 1 1 1 1 > > a very extended log file can be obtained by > > SET OUTPUT_FORMAT = 1 1 1 1 2 > > best > Andras > > "T. .R. Dafforn" wrote: > > > > Similar question really. > > > > I end up with : > > ipdbnam_W> environment variable PDBENT undefined > > rdpir___E> reading in alignment > > > > then everything dies. > > I have been using modeller sucessfully for three years but for some reason this > > file won't run? > > Cheers > > Tim > > Xavier Gallet wrote: > > > > > Hi, > > > > > > My last Modeller job failed, and the last line of my log file is: > > > > > > coutpir___E> reading in alignment > > > > > > Can you tell me what 'coutpir' means ?? > > > More generally, where can I find a list of Modeller error messages and their > > > significances. > > > > > > Thanks in advance, > > > > > > Xavier Gallet, PhD > > > Department of Bioinformatics & IT > > > GenOdyssee S.A. > > > 3 avenue du Canada > > > Batiment Alpha, Porte 6 > > > B.P. 810 Les Ulis > > > 91974 Courtaboeuf Cedex, France > > > > > > e-mail : gallet@genodyssee.com > > > website: http://www.genodyssee.com > > > > -- > > Tim Dafforn > > University of Cambridge > > Structural Medicine Unit > > Cambridge Institute for Medical Research > > Hills Rd, Cambridge CB2 2XY. > > UK > > Tel. (01223) 763230 > > Fax. (01223) 336827 > > http://smokeroom.cimr.cam.ac.uk/ > > -- > , > Andras Fiser, PhD # phone: (212) 327 7216 > The Rockefeller University # fax: (212) 327 7540 > Box 270, 1230 York Avenue # e-mail:fisera@rockefeller.edu > New York, NY 10021-6399, USA # http://salilab.org/~andras
-- Tim Dafforn University of Cambridge Structural Medicine Unit Cambridge Institute for Medical Research Hills Rd, Cambridge CB2 2XY. UK Tel. (01223) 763230 Fax. (01223) 336827 http://smokeroom.cimr.cam.ac.uk/