20 Jul
2019
20 Jul
'19
12:11 a.m.
Hello everyone,
As mentioned in the title, is there any way to ignore/skip loop modeling in MODELLER9v21? My script is as follows: ==========[script]============ env = environ() a = automodel(env, alnfile='HM_1KTZ-202_het.ali', knowns='202_het', sequence='TGFbeta1_HM_1KTZ', assess_methods=(assess.DOPE, #soap_protein_od.Scorer(), assess.GA341)) a.starting_model = 1 a.ending_model = 3 a.make() ==========[script]============ My template has a missing loop (13 amino acids long) but MODELLER automatically links before/after the loop region for the modeled structures, which looked quite unreasonable.
Many thanks, YooChan
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Yoochan Myung
*PhD student | Ascher Lab*
Department of Biochemistry and Molecular Biology
The University of Melbourne
30 Flemington Road, Parkville VIC 3010, Australia
m: 0421188971 | e: ymyung@student.unimelb.edu.au