Hello everyone,
Does anyone know why I am getting the error message "Implied target CA(i)-CA(i+1) distances longer than 8.0 angstroms:" when running MODELLER and how I can fix it. Pasted below is the MODELLER log file:
--------------------------------------------------- MODELLER 7v7, Sep 12, 2004 09:15pm
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2004 Andrej Sali All Rights Reserved
Written by A. Sali
with help from
B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A. Marti-Renom, N. Eswar, F. Alber, B. Oliva, A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington, E. Feyfant University of California, San Francisco, USA Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, Linux hertz.med.miami.edu 2.6.8-1.521 i686 Date and time of compilation : 09/12/2004 21:24:59 Job starting time (YY/MM/DD HH:MM:SS): 2005/02/18 09:22:45.082
getprog_531W> ROUTINE redefined: special_restraints
check_ali___> Checking the sequence-structure alignment.
Implied target CA(i)-CA(i+1) distances longer than 8.0 angstroms:
ALN_POS TMPL RID1 RID2 NAM1 NAM2 DIST ---------------------------------------------- END OF TABLE
delete__443_> Restraints marked for deletion were removed. Total number of restraints before, now: 32023 29838 csrrng__299E> Atom index is out of bounds: 2393 2391 recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 15913527 15540.554 15.176 Starting time : 2005/02/18 09:22:45.082 Closing time : 2005/02/18 09:22:59.215 Total CPU time [seconds] : 11.92 ----------------------------------------------------
Many thanks, Amjad