[modeller_usage] Residues in disallowed region

Bo Yang

27 Nov 2008 27 Nov '08

7:34 p.m.

Hello, Modeller:

The models built from Modeller 8v1 contain some residues (non-Gly and non-Pro) in the disallowed region based on Ramachandran plot. I wonder how this could happen? How to change these residues back to allowed region?

I try to use energy minimization such as NAMD and Amber. After all, the minimized models had increased numbers of residues in the disallowed region.

Thank you for your advice

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