Sir I have installed modeller7v7 in windows2000. The input files are in 'C:/Program Files/Modeller7v7 after running the mod7v7 model-default, it could recognise model-default.top file but log file is showing that alignment file is not found
please, could u mail me what is the problem?
thank you in advance. rajkumar The log file is as follows
MODELLER 7v7, Sep 12, 2004 09:15pm
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2004 Andrej Sali All Rights Reserved
Written by A. Sali
with help from
B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A. Marti-Renom, N. Eswar, F. Alber, B. Oliva, A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington, E. Feyfant University of California, San Francisco, USA Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, Win2000 build 2195 Service Pack 2, E007A, uni, x86 Family 15 Model 2 Stepping 4 Date and time of compilation : 09/13/2004 17:17:22 Job starting time (YY/MM/DD HH:MM:SS): 2005/01/22 20:25:10.812
TOP_________> 109 749 SET ALNFILE = 'c:/Program Files/Modeller7v7/alignment'
TOP_________> 110 750 SET KNOWNS = '1amu'
TOP_________> 111 751 SET SEQUENCE = '1fax'
TOP_________> 112 752 SET ATOM_FILES_DIRECTORY = 'c:/Program Files/Modeller7v7/; 1amu'
TOP_________> 113 753 SET STARTING_MODEL = 1
TOP_________> 114 754 SET ENDING_MODEL = 1
TOP_________> 115 755 CALL ROUTINE = 'model'
TOP_________> 116 419 CALL ROUTINE = 'getnames'
TOP_________> 117 534 STRING_IF STRING_ARGUMENTS = MODEL 'undefined', OPERATION; = 'EQ', THEN = 'STRING_OPERATE OPERATION = CONCATENA; TE, STRING_ARGUMENTS = SEQUENCE .ini, RESULT = MODEL'
TOP_________> 118 535 STRING_IF STRING_ARGUMENTS = CSRFILE 'undefined', OPERATI; ON = 'EQ', THEN = 'STRING_OPERATE OPERATION = CONCATE; NATE, STRING_ARGUMENTS = SEQUENCE .rsr, RESULT = CSRFILE; '
TOP_________> 119 536 STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = SEQUENCE '.sch', RESULT = SCHFILE
TOP_________> 120 537 STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = SEQUENCE '.mat', RESULT = MATRIX_FI; LE
TOP_________> 121 538 SET ROOT_NAME = SEQUENCE
TOP_________> 122 539 RETURN
TOP_________> 123 420 CALL ROUTINE = 'homcsr'
TOP_________> 124 112 READ_ALIGNMENT FILE = ALNFILE, ALIGN_CODES = KNOWNS SEQUE; NCE
Dynamically allocated memory at amaxseq [B,kB,MB]: 84067 82.097 0.080 fullfn__230E> File not found: c:/Program Files/Modeller7v7/alignment Directories: Extensions : :.ali Prefixes : nothing, pdb recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 84067 82.097 0.080 Starting time : 2005/01/22 20:25:10.812 Closing time : 2005/01/22 20:25:12.140 Total CPU time [seconds] : 1.19
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