Hi:
Hi to all the modeller users in the list! Im new to modeller, and trying to build my first modeller derived model. I already knew the template I want to use and the sequence to model.
When run my script I get the following error:
check_a_337E> Structure not read in: 1 recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
I assume the error is my definition of my set atoms file, the script Im using goes like this:
SET ALNFILE = '01mod.ali' # alignment filename SET KNOWNS = '1cx1' # codes of the templates SET SEQUENCE = '1dnj' # code of the target SET ATOM_FILES_DIRECTORY = './:../PDB:./atom_files' # directories for input atom files SET STARTING_MODEL= 1 # index of the first model SET ENDING_MODEL = 2 # index of the last model SET DEVIATION = 4.0 # have to be >0 if more than 1 model SET RAND_SEED = -12312 # to have different models from another TOP file CALL ROUTINE = 'model' # do homology modelling
I have my pdb file in ./atoms_files (named 1cx1.pdb) and my alnfile and sequence (01.mod.ali 1dnj.seq) in ./ >From the user manual I think my Atoms files directory is well defined, however Im stuck...
There is some stupid/basic mistake Im overlooking?
Thanks in advance,
Luis Rosales