I got a problem when i'm modelling my protein. The situation is that:
I found my protein (aam) has a partial similarity with 1nkl ('5:' ' 127:'), made a ali. file, and call routine ='model' or using "build_model" . I got a PDB format file or .ini file (for example aam.B999901 or aam.ini). Then, i try to transfer / or modify another segment of aam from a high similarity protein (1udg, '223:' '289:') without losing 1nkl ('5:' '127:') information in aam.ini file, but in vain. Could you tell me which commands fit this purpose?
Thanks for help.
Xingxuan He, MD. Associate Dept. of Human Genetics Mt. Sinai Medical Center