Hello, I am trying to use mutate.py script from modeller site http://salilab.org/modeller/wiki/Mutate%20model
I have python2.5 core and devel packages installed. When I run > mod9v5 - 1klc.nodummies.chains.pdb 500 ARG B < mutate.py > out (according to the instructions in the header of the script) I get the following error
========================================== 'import site' failed; use -v for traceback Traceback (most recent call last): File "(stdin)", line 2, in ? ImportError: No module named os ==========================================
Setting $PYHTONHOME to /usr/lib64/python2.5 (where os.py is located) does not help.
Copying os.py to local folder results in the following error
======================================================================= 'import site' failed; use -v for traceback Traceback (most recent call last): File "<string>", line 1, in ? File "/usr/local/modeller/modlib/modeller/__init__.py", line 45, in ? import os.path, re, sys File "os.py", line 134 from os.path import (curdir, pardir, sep, pathsep, defpath, extsep, altsep, ^ SyntaxError: invalid syntax =======================================================================
I seriously doubt that there is an error in os.py file of my python distribution.
Any suggestions? Thanks!