On 10/25/13 12:57 AM, micheal j twin wrote: > Here, I am unable to > use the initial model for my second strep model generation. I am facing > the usual error (saying 'No atoms are specified from input file) as > reported earlier by others.
Please read the manual: http://salilab.org/modeller/9.12/manual/node26.html
As stated in the manual, you need to modify the alignment file header for the model (not the template) to tell Modeller which part of the initial model to read in.
Ben Webb, Modeller Caretaker