On 3/7/12 9:13 AM, Irene Newhouse wrote: > openf______E> Cannot open file cp6s.ali: No such file or directory ... > [newhoir@hals cpt6short]$ ls *ali > > My .py file is: > > cps6.alifrom modeller import *
Either you mistyped something here, or your alignment file is called 'cps6.ali'. That's not the same as 'cp6s.ali'.
Ben Webb, Modeller Caretaker