Hello all, I´m a begginer user of MODELLER, and I have a question for you: I´m making docking experiments, and the protein I have got from the PDB has some gaps, so the docking can´t go on. So, I thought I could model the protein using its own cristal as template. So I did, but the models I got don´t fit very well with the original cristal (when I superimpose them with MacPyMol, the models are very deviated from the cristal). What can I do to improve the adjustment between models and template? Thanks for your attention.
Mª Victoria Ruiz Pérez CIBER de Enfermedades Raras Departamento de Biología Molecular y Bioquímica Facultad de Ciencias, Universidad de Málaga Campus de Teatinos, sn; 29071 Málaga Tlf. 952 137135
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