Dear Modeller Caretaker and Modeller users,
I want Modeller to fit generated models by dope_loopmodel class. But only structures derived from the same IL000* file are superimposed to it. Also templates are aligned, but not to generated models.
Thanks in advance, Ilya. I used following:
class MyModel(dope_loopmodel): def special_patches(self, aln): self.patch(residue_type='DISU', residues=(self.residues['21'], self.residues['92'])) log.very_verbose() env = environ() env.io.atom_files_directory = ['.', '../']
a = MyModel(env, alnfile='../mulalignment.ali', knowns=('1', '2','3'), sequence='d6', assess_methods=assess.DOPE, loop_assess_methods=assess.DOPE)
a.starting_model = 1 a.ending_model = 3 a.md_level = refine.very_fast
a.loop.starting_model = 1 a.loop.ending_model = 3 a.loop.md_level = refine.very_fast
a.final_malign3d = True a.make()