Hi all,
I'm wanting to add in an ATP molecule based on my template to my modelled structure. I have looked at the FAQ and it does seem a laborious task to write the CHARM topology files etc. I was wondering if there was a database of ligands (wiki? type thing) or a web based converter ( i have already looked at Prodrg in dundee) or if someone wants to share their top files for ATP.
...Or any alternative methods out there?
I'm currently using 8v2 but with old scripts and will upgrade soon.
Cheers
joel