[modeller_usage] [Fwd: Cannot generate the plot of DOPE?]

-------- Original Message -------- Subject: Cannot generate the plot of DOPE? Date: Wed, 9 May 2007 02:03:18 +0900 From: Ngo Duc Tri ngoductri@gmail.com To: modeller-care@salilab.org

Dear Modeller users, I finished modelling my protein and doing the evaluation step. I run the file evaluate_model.py to calculate the DOPE score of my model. I got DOPE score : -39521.605469 and there was no error in the log file.

I use this profile file to generate the DOPE plot using GNUPLOT but this program show a strange line. Actually It just show the position of my aminoacid but no DOPE score for each.

I run the GNUPLOT and used the command: plot ' myprotein.profile'

I want to ask you If it's the error of GNUPLOT or my profile file? And how can i fix it to show the actual DOPE score for each residues.

Thank you very much for your comments, Best regards, TriNgo Sungkyunkwan University