13 Jun
2006
13 Jun
'06
4:35 p.m.
Dear MODELLER users,
I was looking for answers to the following questions?
1. What is the best approach to model proteins with large insertions (approximately 50residues) at different parts of the protein. Example AAAAAA---------------------------------BBBBBB---------------------------------------------CCCC Even if the alignment is good, I get an exceeded maxmolpdf error in the model building stage. I am not sure what value to set for the maxmolpdf .
2.Is it possible to build only the core residues without the insertions?
It would be helpful if you can point me to references related to the same.
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Vimalkumar Velayudhan