25 Jun
2007
25 Jun
'07
3:16 a.m.
Good morning
I have been generating models using the dopehr_loopmodel route, having decided it would be more efficient to only generate loop models for the lowest energy comparative model I switched to generating structures using the automodel class and then defining the loop regions by visualizing the lowest energy structure and plugging the values in to the 'Loop refinement of an existing model' example script provided with Modeller 9v1. The resulting loop models do not generate models of nearly the same quality - as judged by Ramachandran plots - than the automatically generated loop models. Is there a convenient way to extract the loop sequence information that loop model uses to generate it's models.
Regards
Mike Paterson