Hoi,
First of all, thanks for your last explanation, Ben (was: 'code and logic question'). I just forgot to reply.
My problem now is, how to create and apply arbitrary symmetry: The manual provides the nodes 28 and 103- http://www.salilab.org/modeller/manual/node28.html http://www.salilab.org/modeller/manual/node103.html - which already is a good starting point, but even after looking into the python code it is not clear to me how to distinguish between different symmetries. How, for example would I have to write: "Add restraints for a model with D6 symmetry (Schönflies notation), where all subunits have identical sequences."? Or "add restraints for a hexameric model with C3 symmetry."?
Are there examples beyond the two nodes which address this question?
TIA Christian