I'm sorry to disturb you but i got the old error say that: "read_al_375E> Unknown residue type,position,sequence" when I run the script: model-single.py. I also check the name very careful. It's right. Please tell me how to solve this error.
Here is my code:
File model-single.py:
from modeller import * from modeller.automodel import *
env = environ() a = automodel(env, alnfile='blbp-1ehyA.ali', knowns='1ehyA', sequence='blbp') a.starting_model = 1 a.ending_model = 5 a.make()
File blbp-1ehyA.ali:
>P1;1ehyA structureX:1ehyA: 2 :A: 294 :A::: 2.10:-1.00 AIRRPEDFKHYEVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAEHYDVIVPDLRGFGDSEKPDLND LSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFESWYSQFHQLDMAV EVVGSSREVCKKYFKHFFDHWSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLP VTMIWGLGDTCVPYAPLIEFVPKYYSNYTMETIEDCGHFLMVEKPEIAIDRIKTAFR*
>P1;blbp sequence:blbp::::::: 0.00: 0.00 MPDPASGIAI NRVPANGLEF EVAMAGEGDH LALMLHGFPE LHFSWRHQMP LLAEMGYRVW APNMRGYGET TRPTEVRDYA LDHLTQDVAA LIDASGATKV TLIAHDWGAI IAWYFAILKL RPLERLVIMN VPHPKVLQRE LRRWEQIKKS WYVFFFQLPW LPEKRIGADS GKRIGELFAQ TSCNPERFGP DVKAVYAAGA ARPGAPRAMV NYYRAAMRHR DTIDPGDFRV DVPTLLVWGE EDVALNIRCT EGTEQWVPDI TVKRLPNVSH WVQQDAPDEV NAILREWLPK PAPAS*
Thank you very much!!! NgoDucTri