On 04/22/2011 03:34 AM, email@example.com wrote: > The following script optimize.py is not working for me. It is giving an > error in the line:
It would be more helpful if you said what the error was - then I wouldn't have to guess! But it looks like this is an extremely old script, for Modeller 8. If you're using Modeller 9 (I would recommend that) then you will need to be some adjustments to it. See http://salilab.org/modeller/9.9/manual/node255.html for a suitable script.
BTW, if you are looking to do "serious" optimization, this script probably isn't going to be up to the task.
Ben Webb, Modeller Caretaker