I have recently started using modeller 6v4 (previously using modeller 4). When I ran identical files on 6v4 I got the error seen in the log file below. An example of the type of filename for .top and .ali files is this:
P42460_3-TPR-317-350.ali
When I removed all the _ and - characters from the filenames, and from the relevant lines in the top and alignments, the model was built no problems. Is there a reason why these characters are no longer allowed in modeller 6v4 and if so, is there a way to make it recognise them to save alot of time having to rename all my files? Thanks!
MODELLER 6v2, 17 Feb 2002
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2002 Andrej Sali All Rights Reserved
Written by A. Sali with help from A. Fiser, R. Sanchez, M.A. Marti-Renom, B. Jerkovic, A. Badretdinov, F. Melo, J.P. Overington & E. Feyfant Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, IRIX64 wolf 6.5 IP27 Date and time of compilation : 07/05/2002 17:12:26 Job starting time (YY/MM/DD HH:MM:SS): 2003/05/27 14:13:21.725
rdactio_534E> Command not recognized: recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Dynamically allocated memory at finish [B,kB,MB]: 2190959 2139.608 2.089 Starting time : 2003/05/27 14:13:21.725 Closing time : 2003/05/27 14:13:26.674 Total CPU time [seconds] : 0.00